|Year : 2021 | Volume
| Issue : 2 | Page : 276-282
Serum metabolic disturbances associated with acute-on-chronic liver failure in patients with underlying alcoholic liver diseases: An elaborative NMR-based metabolomics study
Umesh Kumar1, Supriya Sharma2, Manjunath Durgappa3, Nikhil Gupta4, Ritu Raj4, Alok Kumar3, Prabhat N Sharma3, VP Krishna3, R Venkatesh Kumar2, Anupam Guleria4, Vivek A Saraswat3, Gaurav Pande3, Dinesh Kumar3
1 Centre of Biomedical Research (CBMR), Sanjay Gandhi Postgraduate Institute of Medical Sciences (SGPGIMS), Lucknow, Uttar Pradesh, India; Department of Zoology, Babasaheb Bhimrao Ambedkar University (BBAU), Lucknow, Uttar Pradesh, India
2 Department of Gastrosurgery, Sanjay Gandhi Postgraduate Institute of Medical Sciences (SGPGIMS), Lucknow, Uttar Pradesh, India
3 Department of Gastroenterology, Sanjay Gandhi Postgraduate Institute of Medical Sciences (SGPGIMS), Lucknow, Uttar Pradesh, India
4 Centre of Biomedical Research (CBMR), Sanjay Gandhi Postgraduate Institute of Medical Sciences (SGPGIMS), Lucknow, Uttar Pradesh, India
|Date of Submission||28-May-2020|
|Date of Decision||03-Jun-2020|
|Date of Acceptance||18-Jun-2020|
|Date of Web Publication||16-Dec-2020|
Dr. Dinesh Kumar
Centre of Biomedical Research (CBMR), SGPGIMS Campus, Lucknow 226014, Uttar Pradesh
Dr. Gaurav Pande
Department of Gastroeneterology, Sanjay Gandhi Postgraduate Institute of Medical Sciences (SGPGIMS), Lucknow 226014, Uttar Pradesh
Source of Support: None, Conflict of Interest: None
| Abstract|| |
Objectives: Acute-on-chronic liver failure (ACLF), which develops in patients with underlying alcoholic liver disease (ALD), is characterized by acute deterioration of liver function and organ failures are secondary to that. The clear understanding of metabolic pathways perturbed in ALD-ACLF patients can greatly decrease the mortality and morbidity of patients through predicting outcome, guiding treatment, and monitoring response to treatment. The purpose of this study was to investigate the metabolic disturbances associated with ACLF using nuclear magnetic resonance (NMR)-based serum metabolomics approach and further to assess if the serum metabolic alterations are affected by the severity of hepatic impairment. Materials and Methods: The serum-metabolic profiles of 40 ALD-ACLF patients were compared to those of 49 age and sex-matched normal-control (NC) subjects making composite use of both multivariate and univariate statistical tests. Results: Compared to NC, the sera of ACLF patients were characterized by significantly decreased serum levels of several amino acids (except methionine and tyrosine), lipid, and membrane metabolites suggesting a kind of nutritional deficiency and disturbed metabolic homeostasis in ACLF. Twelve serum metabolic entities (including BCAA, histidine, alanine, threonine, and glutamine) were found with AUROC (i.e., area under ROC curve) value >0.9 suggesting their potential in clinical diagnosis and surveillance. Conclusion: Overall, the study revealed important metabolic changes underlying the pathophysiology of ACLF and those related to disease progression would add value to standard clinical scores of severity to predict outcome and may serve as surrogate endpoints for evaluating treatment response.
Keywords: 1H NMR, acute-on chronic liver failure, alcoholic liver disease, diagnostic panel of biomarkers, multivariate analysis, serum metabolomics
|How to cite this article:|
Kumar U, Sharma S, Durgappa M, Gupta N, Raj R, Kumar A, Sharma PN, Krishna V P, Kumar R V, Guleria A, Saraswat VA, Pande G, Kumar D. Serum metabolic disturbances associated with acute-on-chronic liver failure in patients with underlying alcoholic liver diseases: An elaborative NMR-based metabolomics study. J Pharm Bioall Sci 2021;13:276-82
|How to cite this URL:|
Kumar U, Sharma S, Durgappa M, Gupta N, Raj R, Kumar A, Sharma PN, Krishna V P, Kumar R V, Guleria A, Saraswat VA, Pande G, Kumar D. Serum metabolic disturbances associated with acute-on-chronic liver failure in patients with underlying alcoholic liver diseases: An elaborative NMR-based metabolomics study. J Pharm Bioall Sci [serial online] 2021 [cited 2021 Sep 29];13:276-82. Available from: https://www.jpbsonline.org/text.asp?2021/13/2/276/303530
| Introduction|| |
The spectrum of alcoholic liver diseases (ALD) includes steatosis (fatty liver), steatohepatitis (fatty liver with inflammation, also called alcoholic hepatitis), progressive liver fibrosis, and cirrhosis. Acute-on-chronic liver-failure (ACLF) is a new clinical syndrome characterized by intense systemic inflammation and acute deterioration of liver function., Currently, the biggest challenge in the clinical management of ACLF is the lack of reliable methods for rapid evaluation of disease severity, predicting therapeutic outcomes and survival. The Model for End-Stage Liver Disease (MELD)—which is commonly applied method for outcome prediction in patients with stable cirrhosis,—has several limitations with regard to outcome prediction in ACLF. Therefore, recently a new organ failure based CLIF-SOFA (i.e., chronic liver failure sequential organ failure assessment) score have been developed. Even though, the clinical decisions related to both selecting the appropriate treatment options as well as liver transplantation in ACLF patients are still driven by liver biopsy. Therefore, there is paucity and felt need of non-invasive surrogate markers to improve clinical diagnosis and prognosis of ACLF, monitoring treatment response and moreover to assess the severity of hepatic function. Metabolomics, because it allows rapid identification of metabolic perturbations in biological systems in response to a disease or therapeutic intervention, is increasingly being applied for identification of metabolic markers in body fluids (such as blood plasma/serum and urine) for improving the diagnosis and prognosis of human diseases. Starting our efforts in this direction, we employed NMR based metabolomics approach to investigate altered metabolic profiles in the sera of ALD-ACLF patients and sought to identify perturbed metabolic pathways associated with severity of hepatic impairment.
| Materials and Methods|| |
Recruitment of subjects
The study protocol was approved by the institutional research and ethical committee, Sanjay Gandhi Postgraduate Institute of Medical Sciences (SGPGIMS), Raibareli Road, Lucknow 226014, India (IEC Code: 2017-186-DM-99(B); File Number: PGI/BE/804/2017; Approval Date: October 30, 2017). The enrollment of subjects was carried out according to the norms of World Medical Association (WMA) declaration of Helsinki. An informed written consent was obtained from the guardians/kin of the patients after informing them the purpose of study. Relevant clinical and demographic details were collected for all the subjects in a custom-designed questionnaire. Serum samples were obtained from ALD patients (n = 40, 100% male with ascites) admitted in critical intensive care unit (ICU) for the management of ACLF (with Grade ≥ II based on CLIF-SOFA score). Only patients with alcoholic acute hepatitis and alcoholic cirrhosis were considered and ACLF was diagnosed as per APASL and ACLF grades as per CLIF C̈ SOFA criteria. Exclusion criteria were age > 65 years, severe cardiopulmonary disease, chronic kidney disease (CKD) on dialysis, evidence of hepatocarcinoma or hepatic malignancy, infection with the human immunodeficiency virus, hepatitis B or C viruses, and a past history of acute decompensation during the previous 6 months. Blood samples were obtained within 1–3 days after the patient is stabilized in the ICU. Gender, age, the presence of ascites or hepatic encephalopathy, serum albumin bilirubin, the International Normalized Ratio, serum glutamic-oxaloacetic transaminase (SGOT) activity, serum glutamic pyruvic transaminase (SGPT) activity, and serum urea and creatinine levels were recorded at inclusion. For comparative analysis, the serum samples from 49 age matched normal control (NC) male subjects were collected after taking an informed consent. In each case, it was confirmed that the NC subjects are normotensive with no cardiovascular abnormalities and satisfying the above exclusion criteria. Each subject, either patient or healthy volunteer, provided a blood sample after overnight fasting for serum extraction. The serum was extracted as per the established protocol, transferred into a sterile 1.5mL microcentrifuge tube (MCT) immediately after the processing and stored at −80°C until the NMR experiments were performed.
Nuclear magnetic resonance measurements
The NMR experiments were performed and resulted NMR spectral features were analyzed as described previously.,,
| Results|| |
Clinical and demographic details
The clinical and demographic characteristics of the subjects are summarized in [Table 1]. Based on the inclusion and exclusion criteria (as described in “Materials and Method” section), a total 89 subjects were involved in this study, 40 forming the disease group (ALD-ACLF) and 49 forming the NC group. The mean age of the ALD-ACLF and NC groups was 41.7 ± 7.54 and 45 ± 6.73 years, respectively. The main diagnoses for ACLF patients included in this study were sepsis (20%), HE, ascites (100%), and jaundice, whereas the main etiologic precipitant for ACLF was alcohol intake (within 4 weeks) with or without bacterial infection.
|Table 1: Biochemical, clinical, and demographic characteristics of patients with ALD-ACLF and control cohorts recorded at inclusion|
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Metabolic disturbances associated with acute-onchronic liver failure in patients with alcohol-related liver disease
The present study aims to compare the NMR based serum metabolic profiles of 40 ALD-ACLF patients and normal control (NC) subjects. The comparison of cumulative 1D 1H CPMG NMR spectra of serum samples obtained from ALD-ACLF patients (n = 40) and NC subjects (n = 49) provided an overview of metabolic variations (see [Figure S1] in the electronic supplementary material, ESM). The majority of metabolites in the NMR spectra were identified and assigned by comparing the chemical shift and peak patterns with the 800 MHz database library of CHENOMX NMR suite. These metabolite assignments were further validated using previously reported NMR assignments of serum/plasma metabolites in the literature in tandem with Biological Magnetic Resonance Data Bank (BMRB) database and The Human Metabolome Database (HMDB: http://www.hmdb.ca).,,, The exercise resulted into the unambiguous identification of 34 circulatory metabolites for concentration profiling in CHENOMX: 3-hydroxybutyrate (3HB), acetate, acetone, alanine, aspartate, choline, citrate, creatine, creatinine, fumarate, glucose, lactate, glutamate, glutamine, glycerol, glycine, isoleucine, leucine, lysine, mannose, methionine, phenylalanine, proline, propylene-glycol, pyruvate, succinate, threonine, trimethylamine, trimethylamine N-oxide (TMAO), tyrosine, urea, valine, sn-Glycero-3-phosphocholine (GPC), and histidine. Database chemical shifts and literature reports additionally provided identification of NMR signals of (a) N-acetyl-glycoproteins (NAG), (b) lipid and membrane metabolites, for example, choline, sn-glycero-3-phosphocholine (GPC), polyunsaturated fatty acids (PUFAs) and (c) lipoproteins, for example, high-density lipoprotein (HDL), low-density lipoprotein (LDL), and very low-density lipoprotein (VLDL) (see ESM, [Figure S1 [Additional file 1]]).
Consistent with previous reports,,, the visual comparison of 1D 1H CPMG NMR spectra revealed altered serum levels for lipid and membrane metabolites in addition to evidently decreased serum levels of acute-phase proteins as inferred from low intensity NMR signal of N-acetyl glycoproteins at 2.01 ppm (See Electronic Supplementary Material [ESM], [Figure S1A]). However, the subtle metabolic differences in the sera of patients and NC subjects were not visually evident. Therefore, the NMR spectral features were subjected to multivariate data analysis to identify serum metabolic disturbances associated with ALD-ACLF. First, the CPMG data matrix containing normalized spectral features was analyzed using unsupervised PCA method, for evaluating initial grouping trends and class separation. Further, we employed supervised clustering method PLS-DA to reveal subtle metabolic differences among the study groups. The two dimensional score-plot derived PLS-DA model based analysis of normalized CPMG spectral features is shown in [Figure 1A]. Clearly evident that the serum samples of patients and control groups are well clustered and separated from each other indicating that the serum metabolic profiles of ACLD-ACLF patients are distinctively different from NC subjects. The PLS-DA model cross-validation parameters, R2 (explained variation) and Q2 (predictive capability) were significantly higher (R2 > 0.95, Q2 > 0.88, [Figure 1B]) suggesting that discriminatory model possesses a satisfactory fit with good predictive power. The metabolic features responsible for separating the study cohorts were identified using VIP score indexing. The VIP score plot highlighting top 25 metabolic changes with highest VIP score (VIP score ≥ 1.5) is shown in [Figure 1C] and the corresponding student t-test results are shown in electronic supplementary material (ESM, [Figure S1B and S1C]). Compared to NC group, the serum levels of glucose, branched chain amino acids (valine, leucine), N-acetyl-glycoproteins, lipoproteins (HDL, LDL, and VLDL) and other lipid and membrane metabolites (such as choline, GPC, and PUFA) were decreased in ALD-ACLF patients, whereas those of glucose, lactate, acetate, TMAO, betaine, creatinine and methionine were increased in the patient cohort [Table 2].
|Figure 1: (A,D) 2D score plots derived from PLS-DA model analysis involving normalized spectral features (A) and explicit concentration profiles (D) obtained for serum samples of ALD-ACLF patients (in red) and normal control subjects (in blue). The shaded or semi-transparent areas represent the 95% confidence regions of each group as depicted by their respective colors. (B,E) are barplots showing the three performance measures (prediction accuracy, multiple correlation coefficient R2 and the explained variance in prediction Q2) obtained after10 fold Cross Validation analysis. The validation parameters (R2 and Q2) obtained for PLS-DA model based on five and three components are displayed in the respective score plots in (A) and (D). (C,F) The VIP score plots derived from PLS-DA model based on five components in (C) and three components in (F). The symbol asterisk “*” represents the metabolic change is statistically significant as well|
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|Table 2: Key serum metabolic profiles of discriminatory relevance evaluated for diagnostic potential in differentiating ALD-ACLF from NC using the receiver operating characteristic (ROC) curve analysis|
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Point to be mentioned here is that the metabolic differences derived from normalized spectral features may provide ambiguous information when the corresponding bin contains signals from multiple metabolites. For example, the spectral bin at 3.23 ppm, which mainly represents glucose, does have contribution of NMR signals from GPC and trimethylamine-N-oxide (TMAO). Other than this, the dominant signals of lipoproteins (LDL, VLDL), lipid/membrane metabolites, glucose and lactate C̈ which contribute to multiple spectral bins—does not render the subtle but significant metabolic changes to show off in the VIP score plot [Figure 1C]. Therefore, to extract further relevant information about metabolic changes, the concentration profiles of 34 circulatory metabolites were estimated from CPMG NMR spectra using CHENOMX NMR suite. The concentrations were further used to estimate circulatory ratios relevant in the present study context such as Glutamate-to-Glutamine ratio (EQR); Phenylalanine-to-Tyrosine ratio (PTR); Histidine-to-tyrosine ratio (HTR) and branched-chain amino-acid-to-tyrosine ratio (BTR; estimated as: (Leucine + Isoleucine + Valine)/Tyrosine; this is also referred as Fischer ratio,). The resulted 38 serum metabolic entities were compared using supervised PLS-DA model based discriminatory analysis and the results are shown in Figure 1D–1F. The 2D score plot derived from PLS-DA model is shown in Figure 1D. Clearly evident that the samples are well clustered within their respective groups and the samples of two study groups are well separated suggesting that the serum metabolic profiles of ALD-ACLF patients are distinctively different from NC subjects [Figure 1D]. Further, the higher values of cross-validation parameters (R2 ~ 0.75, Q2 ~ 0.66) clearly established the goodness of separation between classes, and the statistical significance of the class-separating metabolic features [Figure 1E]. Figure 1F showing the VIP score plots highlights top 15 metabolic changes ranked according to their increasing discriminatory potential. Compared to NC, the sera of ACLF patients were characterized by decreased serum levels of various amino acids (valine, leucine, isoleucine, alanine, glycine, proline, threonine, glutamine, glutamate, aspartate, histidine and phenylalanine), and other circulatory metabolic entities such as glucose, acetate, acetone, citrate, fumarate, mannose, glycerol, trimethylamine, lactate, histidine-to-tyrosine ratio (HTR) and branched-chain-amino-acid-to-tyrosine ratio (BTR) whereas circulatory levels of methionine, trimethylamine-N-oxide and glutamate-to-glutamine ratio (EQR) were found significantly elevated in ALD-ACLF patients.
Following the identification of discriminatory serum metabolic entities (NMR variables), the ROC analysis was performed as a quantitative measure to evaluate their potential (i.e., specificity and sensitivity) for differentiating ACLF from NC cohort [Figure S2]. First, we computed ROC curves for all the top 25 normalized spectral features and the results are summarized in [Table 2]. Of various discriminatory metabolic entities, 14 metabolic entities (HDL, NAG+Lipid, LDL, lipid, choline, GPC, NAG, betaine, glucose, PUFA, TMAO, and glucose, VLDL, and creatinine) were found with AUROC value >0.8, suggesting these NMR-based serum signals show significant potential for differentiating ACLF patients from NC cohort. The representative ROC curve plots of 12 serum metabolic entities with the highest diagnostic potential are shown in [Figure S2 [Additional file 2]] in tandem with corresponding box plots to highlight the degree of metabolic alterations in ACLF compared to NC group.
Next, the concentration profiles of circulatory metabolites were evaluated for their diagnostic potential and the results of ROC curve analysis are summarized in ESM, [Figure S3 [Additional file 3]]. Of 38, 12 circulatory metabolic entities (valine, isoleucine, leucine, HTR, BTR, histidine, alanine, trimethylamine, GPC, fumarate, threonine, and glutamine) were found with AUROC value >0.9 suggesting these could be potential biomarkers for clinical evaluation and surveillance of patients with ACLF in critical care. The representative ROC curve plots of 12 serum metabolic entities with the highest diagnostic potential are shown in ESM, [Figure S3A] in tandem with their respective box plots in ESM, [Figure S3B] to highlight the metabolic aberrations in ACLF compared to NC group. The implications of these metabolic changes (i.e., similarities or differences) in the pathogenesis of ACLF patients with underlying ALD have been discussed in detail below.
This study represents the first most elaborative high-field NMR-based metabolomics analysis of human sera collected from well‐characterized ACLF patients with pre-existing alcoholic liver diseases. The sera of ACLF patients were characterized by significantly decreased serum levels of various amino acids (except methionine and tyrosine) and those of lipid and membrane metabolites suggested severe nutritional deficiency in ACLF which may be attributed to several factors such as (a) poor oral intake and follow a low calorie diet, (b) fat malabsorption due to impaired mucosal barrier function, and metabolic response to the stress of critical ill. Malnutrition such as protein-energy malnutrition, muscle and adipose tissue depletion are common in patients with advanced liver disease,, and may progress further as liver function crumbles resulting into other critical complications like ascites, hepatic encephalopathy, infections, and death as evident in case of ACLF. However, the clinical use of NMR based serum metabolomics approach as a diagnostic and prognostic tool for ACLF needs further validation studies on larger prospective cohorts of ACLF patients in a longitudinal manner to confirm these results and their association with clinical outcomes and severity of hepatic impairment. Nevertheless, the present study will form the basis for future clinical metabolomics studies aiming to identify metabolomics biomarkers for early diagnosis, predicting outcomes, differentiating clinical subtypes, determining the severity of the condition, monitoring treatment response, and guiding clinical trial testing.
DK acknowledges the Department of Science and Technology for financial assistance under SERB EMR Scheme (Ref. No.: EMR/2016/001756). AG acknowledges the Department of Science and Technology (DST), Government of India for financial assistance under DST INSPIRE Faculty Award (Ref. No. DST/Inspire Faculty Award 2014/LSBM-120) and SERB Women Excellence Award (Ref. No. SB/WEA-08/2019). We would also like to acknowledge the Department of Medical Education, Govt. of Uttar Pradesh for supporting the High Field NMR Facility at Centre of Biomedical Research, Lucknow, India. UK acknowledges receipt of a SRF fellowship [ICMR sanction no.3/1/3/JRF-2014/HRD-100 (32508)] from The Indian Council of Medical Research (ICMR), New Delhi, India. RR and NG acknowledge receipt of an SRF fellowship from CSIR, India. Dr. Gaurav Pande and Dr. Dinesh Kumar have equally contributed to this article and both of them are corresponding author. Therefore, either of them can be contacted for any future correspondence.
Financial support and sponsorship
Conflicts of interest
There are no conflicts of interest.
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[Table 1], [Table 2]